AAV gene therapy bioanalysis

AAV gene therapies are revolutionizing medicine at the molecular level. TATAA Biocenter specializes in bioanalysis during the development of advanced therapies.
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Adeno-associated viral vector therapies

In recent years, gene therapy has emerged as a promising frontier in treating various genetic and acquired diseases. Among the different vectors used in gene therapy, adeno-associated virus (AAV) vectors have gained significant attention due to their favorable safety profile, efficient transduction capabilities, and long-term gene expression. AAV gene therapy holds immense potential for addressing a wide range of disorders.


The AAV Vectors

Adeno-associated viruses are small, non-enveloped viruses belonging to the family Parvoviridae. Researchers derive AAV vectors by removing essential viral genes for replication from wild-type AAVs and integrating therapeutic transgenes into their genomes. The resulting recombinant AAV vectors retain their ability to infect target cells but are replication-incompetent, making them safe for gene therapy applications.

Mechanism of Action

AAV vectors mediate gene transfer through a multi-step process. Upon administration, AAV particles bind to specific cell surface receptors and enter target cells through endocytosis. Once inside the cell, the vector genome is released and transported to the nucleus, where it persists as an episome or integrates into the host genome. Subsequently, it transcribes and translates the transgene encoded by the vector, leading to the expression of the therapeutic protein.

Applications of AAV Gene Therapy

AAV gene therapy has effectively treated various diseases across multiple organ systems. Some notable applications include:

  1. Monogenic Disorders: AAV gene therapy has successfully treated monogenic diseases such as hemophilia, spinal muscular atrophy (SMA), and Leber congenital amaurosis (LCA).
  2. Neurological Disorders: AAV vectors hold promise for treating neurological disorders by enabling targeted delivery of therapeutic genes to the central nervous system (CNS). Ongoing studies are targeting conditions such as Parkinson’s disease, Alzheimer’s disease, and amyotrophic lateral sclerosis (ALS) using AAV-based approaches.
  3. Ophthalmic Disorders: Inherited retinal diseases, including retinitis pigmentosa and age-related macular degeneration, can be treated using AAV gene therapy to restore vision.
  4. Cardiovascular Disorders: AAV vectors offer a novel approach to treating cardiovascular diseases. They deliver therapeutic genes to cardiac tissues to improve heart function and mitigate adverse remodeling.
  5. Cancer Immunotherapy: AAV-mediated gene transfer is being explored in cancer immunotherapy to engineer immune cells with enhanced antitumor activity, thereby bolstering the body’s natural defenses against cancer.


Challenges and Limitations

Despite its tremendous potential, AAV gene therapy must address several challenges and limitations.

  1. Immunogenicity: Preexisting immunity to wild-type AAVs or vector-induced immune responses can limit the efficacy of AAV gene therapy and pose safety concerns.
  2. Vector Production: Scalable and cost-effective production of high-quality AAV vectors remains a bottleneck in translating AAV gene therapy from the laboratory to the clinic.
  3. Targeting Specific Cell Types: It is crucial to optimize the therapeutic outcomes of AAV gene therapy by precisely targeting therapeutic genes to specific cell types or tissues while minimizing off-target effects.
  4. Immune Responses to Transgene Products: Immune responses against the transgene product may occur, particularly in cases of protein replacement therapy, necessitating strategies to mitigate immunogenicity and promote long-term tolerance.
AAV Bioanalysis 

Ensure safety and efficiency are paramount in the development of advanced therapies. Bioanalysis plays a critical role in assessing therapeutic products’ quality, purity, and potency. Among the various techniques employed in bioanalysis, quantitative polymerase chain reaction (qPCR) and digital polymerase chain reaction (dPCR) are indispensable tools for precise and sensitive nucleic acid quantification. 

Quantitative Polymerase Chain Reaction (qPCR)

qPCR is a widely used technique for quantifying the amount of specific nucleic acid sequences in a sample. By amplifying and detecting target DNA or RNA molecules in real-time, qPCR enables precise measurement of gene expression levels, viral load, and vector genome copy numbers. In the context of advanced therapy development, qPCR serves multiple purposes:

  1. Vector Genome Quantification: qPCR allows for accurate quantification of vector genomes, ensuring consistency in vector production and dosing regimens.
  2. Transgene Expression Analysis: Monitoring transgene expression levels using qPCR provides insights into gene therapy products’ therapeutic efficacy and durability.
  3. Viral Clearance Studies: qPCR facilitates the assessment of viral clearance during manufacturing processes, ensuring the safety and purity of therapeutic products.
  4. Integration Site Analysis: When vector integration into the host genome is a concern, qPCR can be employed to analyze integration site frequencies and patterns.
Digital Polymerase Chain Reaction (dPCR)

dPCR represents a significant advancement in nucleic acid quantification, offering absolute quantification without standard curves. By partitioning individual DNA or RNA molecules into thousands of discrete reactions, dPCR provides unparalleled sensitivity and accuracy. Key applications of dPCR in advanced therapy development include:

  1. Viral shedding: dPCR excels at detecting rare genetic targets with exceptional sensitivity and precision, such as low-level viral shedding events. 
  2. Copy Number Variation Analysis: Assessing copy number variations in therapeutic vectors or transgene sequences is crucial for ensuring dosage accuracy and therapeutic consistency.
  3. Absolute Quantification: Unlike qPCR, which relies on relative quantification, dPCR enables absolute quantification of target nucleic acids, providing more reliable and reproducible results.
  4. Assessment of Vector Integrity: dPCR can be used to evaluate the integrity and stability of viral vectors during storage, transportation, and manufacturing processes.
Bioanalytical CRO specialized in AAV gene therapies

With two decades of experience in qPCR and dPCR, we specialize in nucleic acid bioanalysis for cell and gene therapy development. We offer services ranging from extraction to high-throughput screening of preclinical and clinical samples. Our expertise includes developing, optimizing, qualifying, and validating assays according to regulatory requirements and the latest technical guidance. Each project is customized to meet your needs and timeline.






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