Team Publications

2024 Feb 07

Recommendations for Method Development and Validation of qPCR and dPCR Assays in Support of Cell and Gene Therapy Drug Development

Amanda Hays, Mark Wissel, Kelly Colletti, Russell Soon, Mitra Azadeh, Justin Smith, Rajitha Doddareddy, Melanie Chalfant, Wendy Adamowicz, Swarna Suba Ramaswamy, Sanjay L Dholakiya, Sebastian Guelman , Bryan Gullick, Jennifer Durham, Keith Rennier, Pruthvi Nagilla, Anamica Muruganandham, Manisha Diaz, Cassandra Tierney, Kaarthik John, Jenny Valentine, Timothy Lockman, Hsing-Yin Liu, Benjamin Moritz, Jean Paul Ouedraogo, Marie-Soleil Piche, Muriel Smet, Jacqueline Murphy, Kaylyn Koenig, Agnes Zybura, Carrie Vyhlidal, Jonathan Mercier, Niketa Jani, Mikael Kubista, Donald Birch, Karlin Morse, Oskar Johansson

AAPS Journal

2023 Nov 16

Thermoprotection by a cell membrane-localized metacaspase in a green alga

Zou Y, Sabljić I, Horbach N, Dauphinee AN, Åsman A, Sancho Temino L, Minina EA, Drag M, Stael S, Poreba M, Ståhlberg J, Bozhkov PV.

Plant Cell

2023 Feb 26

Vandana Singh, Pegah Johansson, Elina Ekedahl, Yii-Lih Lin, Ola Hammarsten, Fredrik Westerlund

Biochemical and Biophysical Research Communications

2023 Feb 01

Sriram KK, Moa S Wranne, Tsegaye Sewunet, Elina Ekedahl, Maarten Coorens, Teerawit Tangkoskul, Visanu Thamlikitkul, Christian G Giske, Fredrik Westerlund

JAC Antimicrobial Resistance

2023 Jan 25

Organoid technology for personalized pancreatic cancer therapy

Axel Bengtsson, Roland Andersson, Jonas Rahm, Karthik Ganganna, Bodil Andersson & Daniel Ansari

Cellular Oncology

2023 Jan 05

Identification and characterization of plasmids carrying the mobile colistin resistance gene MCR-1 using optical DNA mapping

Sriram Kk, Moa S Wranne, Tsegaye Sewunet, Elina Ekedahl, Maarten Coorens, Teerawit Tangkoskul, Visanu Thamlikitkul, Christian G Giske, Fredrik Westerlund

JAC-Antimicrobial resistance

2022 Aug 19

The Effect of Heavy Metals on Conjugation Efficiency of an F-Plasmid in Escherichia coli

Martin Palm, Alfred Fransson, Julia Hultén, Karolina Búcaro Stenman, Amina Allouche, Oscar E. Chiang, Mirthe L. Constandse, Karlijn J. van Dijk,Suheda Icli,Bela Klimesova,Emma Korhonen,Gema Martínez-Crespo, Dominik Meggers,Margarita Naydenova,Maria An. Polychronopoulou,Dominik B. Schuntermann,Havva Unal,Agnieszka Wasylkowska andAnne Farewell

MDPI Antibiotics

2022 Jun 03

A simple cut and stretch assay to detect antimicrobial resistance genes on bacterial plasmids by single‐molecule fluorescence microscopy

Gaurav Goyal, Elina Ekedahl, My Nyblom, Jens Krog, Erik Fröbrant, Magnus Brander, Tsegaye Sewunet, Teerawit Tangkoskul, Christian G. Giske, Linus Sandegren, Visanu Thamlikitkul, Tobias Ambjörnsson & Fredrik Westerlund

Nature Scientific reports

2022 May 25

Identity of blaCTX-M Carrying Plasmids in Sequential ESBL-E. coli Isolates from Patients with Recurrent Urinary Tract Infections

Nahid Karami, Sriram Kk, Shora Yazdanshenas, Yii-Lih Lin, Daniel Jaén-Luchoro, Elina Ekedahl, Sanjana Parameshwaran, Anna Lindblom, Christina Åhrén, Fredrik Westerlund

Microorganisms

2022 Feb 26

Quantification of single-strand DNA lesions caused by the topoisomerase II poison etoposide using single DNA molecule imaging

Vandana Singh, Pegah Johansson, Elina Ekedahl, Yii-Lih Lin, Ola Hammarsten, Fredrik Westerlund

Biochemical and Biophysical Research Communications

2021 Dec 31

PSB33 protein sustains photosystem II in plant chloroplasts under UV-A light

Anders K Nilsson, Aleš Pěnčík, Oskar N Johansson, Daniel Bånkestad, Rikard Fristedt, Marjaana Suorsa, Andrea Trotta, Ondřej Novák, Fikret Mamedov, Eva-Mari Aro, Björn Lundin Burmeister

Journal of Experimental Botany

2021 Dec 16

High diversity of blaNDM-1-encoding plasmids in Klebsiella pneumoniae isolated from neonates in a Vietnamese hospital

Sriram Kk, Elina Ekedahl, Ngoc Thi Bich Hoang, Tsegaye Sewunet, Björn Berglund, Ludwig Lundberg, Shoeib Nematzadeh, Maud Nilsson, Lennart E Nilsson, Ngai Kien Le, Dien Minh Tran, Håkan Hanberger, Linus Olson, Mattias Larsson, Christian G Giske, Fredrik Westerlund

International Journal of Antimicrobial Agents

2021 Jul 02

Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae)

J. S. Eriksson, C. D. Bacon, D. J. Bennett, B. E. Pfeil, B. Oxelman & A. Antonelli

BMC Ecology and Evolution

2021 Jun 03

Oxidative stress response in regulatory and conventional T cells: a comparison between patients with chronic coronary syndrome and healthy subjects

Anna K. Lundberg, Rosanna W. S. Chung, Louise Zeijlon, Gustav Fernström & Lena Jonasson

Journal of Translational Medicine

2021 Apr 07

Marine microalgae for outdoor biomass production—A laboratory study simulating seasonal light and temperature for the west coast of Sweden

Otilia Cheregi, Johan Engelbrektsson, Mats X. Andersson, Niklas Strömberg, Susanne Ekendahl, Anna Godhe, Cornelia Spetea

Physiolgia Plantarum

2021 Feb 02

Increasing CRISPR-Cas9-mediated Knock-in Efficiency in Human Cell Lines with Viral Modifiers

Anna Hanse

Chalmers Masters Thesis

2020 Feb 21

Dominance of Mating Type A1 and Indication of Epigenetic Effects During Early Stages of Mating in Phytophthora infestans.

Tzelepis G, Hodén KP, Fogelqvist J, Åsman AKM, Vetukuri RR, Dixelius C.

Frontiers in Microbiology

2019 Oct 22

Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation

Oskar N. Johansson, Mats Töpel, Jenny Egardt, Matthew I. M. Pinder, Mats X. Andersson, Anna Godhe & Adrian K. Clarke

Nature Scientific Reports

2019 Oct 11

The MTH1 inhibitor TH588 is a microtubule-modulating agent that eliminates cancer cells by activating the mitotic surveillance pathway

Nadia Gul, Joakim Karlsson, Carolina Tängemo, Teo Lind, Samuel Tuyizere, Rosie Perkins, Chandu Ala, Zhiyuan Zou, Erik Larsson, Martin O. Bergö & Per Lindahl

Nature Scientific reports

2019 Oct 10

Comparative Analysis of Midgut Regeneration Capacity and Resistance to Oral Infection in Three Disease-Vector Mosquitoes

Maria Janeh, Dani Osman & Zakaria Kambris

Nature Scientific reports

2019 Sep 02

Characterization of midgut regeneration capacity and immune responses in local Aedes albopictus mosquitoes

Maria Janeh

American University of Beirut

2019 Aug 06

Friends With Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema marinoi

Oskar N. Johansson, Matthew I. M. Pinder, Fredrik Ohlsson, Jenny Egardt, Mats Töpel,4 and Adrian K. Clarke

Frontiers Microbiology

2019 Jun 14

K+ and Cl− channels/transporters independently fine-tune photosynthesis in plants

Emilija Dukic, Andrei Herdean, Otilia Cheregi, Anurag Sharma, Hugues Nziengui, Dominika Dmitruk, Katalin Solymosi, Mathias Pribil & Cornelia Spetea

Nature Scientific Reports

2019 Jun 12

Evaluation of Precursor and Cofactor Engineering Strategies Influencing Fatty Acid Metabolism in Saccharomyces cerevisiae

Bergman, A

Chalmers PhD Thesis

2019 Apr 05

Nucleomorph Small RNAs in Cryptophyte and Chlorarachniophyte Algae.

Åsman AKM, Curtis BA, Archibald JM.

Genome Biology and Evolution

2019 Mar 29

Functional Expression of Gloeobacter Rhodopsin in PSI-Less Synechocystis sp. PCC6803

Que Chen, Jos Arents, J. Merijn Schuurmans, Srividya Ganapathy, Willem J. de Grip, Otilia Cheregi, Christiane Funk, Filipe Branco dos Santos, Klaas J. Hellingwerf

Frontiers Bioengineering Biotechnology

2019 Mar 29

Effects of overexpression of STB5 in Saccharomyces cerevisiae on fatty acid biosynthesis, physiology and transcriptome

Bergman, A., Vitay, D., Hellgren, J., Chen, Y., Nielsen, J., Siewers, V

FEMS Yeast Research

2019 Feb 27

Microalgae biotechnology in Nordic countries – the potential of local strains

Otilia Cheregi, Susanne Ekendahl, Johan Engelbrektsson, Niklas Strömberg, Anna Godhe, Cornelia Spetea

Physiolgia Plantarum

2019 Feb 05

Polyploid Phylogenetics in Plants: Insights on non-model organisms in Fabaceae and Malvaceae

Jonna Sofa Eriksson

Gothenburg University

2019 Feb 01

Heterologous phosphoketolase expression redirects flux towards acetate, perturbs sugar phosphate pools and increases respiratory demand in Saccharomyces cerevisiae

Bergman, A., Hellgren, J., Moritz, T., Siewers, V., Nielsen, J., Chen, Y.

Micorbial Cell Factory

2018 Nov 14

Combining retinal-based and chlorophyll-based (oxygenic) photosynthesis: Proteorhodopsin expression increases growth rate and fitness of a ∆PSI strain of Synechocystis sp. PCC6803

Que Chen, Jos Arents, J. Merijn Schuurmans, Srividya Ganapathy, Willem J. de Grip, Otilia Cheregi, Christiane Funk, Filipe Branco dos Santos, Klaas J. Hellingwerf

Metabolic Engineering

2018 Aug 13

Involvement of lipid transfer proteins in resistance against a non-host powdery mildew in Arabidopsis thaliana

Per Fahlberg, Nathalie Buhot, Oskar N. Johansson, Mats X. Andersson

Molecular Plant Pathology

2018 May 16

Coupling RNA annealing and strand displacement: a FRET-based microplate reader assay for RNA chaperone activity

Lukas Rajkowitsch, Renée Schroeder

Biotechniques

2018 Jan 27

Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)

Jonna S. Eriksson, Filipe de Sousa, Yann J. K. Bertrand, Alexandre Antonelli, Bengt Oxelman & Bernard E. Pfeil

BMC Evolutionary Biology

2017 May 24

Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities

Thomas Kieselbach, Otilia Cheregi, Beverley R. Green & Christiane Funk

Photosynthesis Research

2017 Mar 16

Damage-Induced Cell Regeneration in the Midgut of Aedes albopictus Mosquitoes

Maria Janeh, Dani Osman & Zakaria Kambris

Nature Scientific reports

2016 Dec 02

A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae)

J.S. Eriksson, J.L. Blanco-Pastor, F. Sousa, Y.J.K. Bertrand, B.E. Pfeil

Molecular Phylogenetics and Evolution

2016 Nov 15

Functional expression and evaluation of heterologous phosphoketolases in Saccharomyces cerevisiae

Bergman, A., Siewers, V., Nielsen, J., Chen, Y.

AMB Express

2016 Jul 15

The activity of HYDROPEROXIDE LYASE 1 regulates accumulation of galactolipids containing 12-oxo-phytodienoic acid in Arabidopsis 

Anders K. Nilsson, Per Fahlberg, Oskar N. Johansson, Mats Hamberg, Mats X. Andersson, Mats Ellerström

Journal of Experimental Botany

2016 Jul 01

Human and murine hematopoietic stem cell aging is associated with functional impairments and intrinsic megakaryocytic/erythroid bias

Rundberg Nilsson, A., Soneji, S., Adolfsson, S., Bryder D. and Pronk, C.J.

PLoS One

2016 May 24

A voltage-dependent chloride channel fine-tunes photosynthesis in plants

Andrei Herdean, Enrico Teardo, Anders K. Nilsson, Bernard E. Pfeil, Oskar N. Johansson, Renáta Ünnep, Gergely Nagy, Ottó Zsiros, Somnath Dana, Katalin Solymosi, Győző Garab, Ildikó Szabó, Cornelia Spetea & Björn Lundin

Nature Communications

2016 May 24

Insights into the Cyanobacterial Deg/HtrA Proteases

Otilia Cheregi, Raik Wagner, Christiane Funk

Frontiers in Plant Science

2016 May 13

Foxf2 is required for secondary palate development and Tgfβ signaling in palatal shelf mesenchyme

Ali M. Nik, Jeanette A. Johansson 1, Mozhgan Ghiami, Azadeh Reyahi, Peter Carlsson

Developmental Biology

2016 Mar 24

Phytophthora infestans Argonaute 1 binds microRNA and small RNAs from effector genes and transposable elements.

Åsman AK, Fogelqvist J, Vetukuri RR, Dixelius C.

New Phytologist

2015 Dec 01

A quick and robust method for quantification of the hypersensitive response in plants.

Oskar N. Johansson

PeerJ

2015 Nov 13

Acylated monogalactosyl diacylglycerol: prevalence in the plant kingdom and identification of an enzyme catalyzing galactolipid head group acylation in Arabidopsis thaliana

The Plant Journal

2015 Nov 01

Inactivation of the Deg protease family in the cyanobacterium Synechocystis sp. PCC 6803 has impact on the outer cell layers

Otilia Cheregi, Helder Miranda, Gerhard Gröbner, Christiane Funk

Journal of Photochemistry and Photobiology

2015 Sep 01

Presence of state transitions in the cryptophyte alga Guillardia theta

Otilia Cheregi, Eva Kotabová, Ondřej Prášil, Wolfgang P Schröder, Radek Kaňa, Christiane Funk

Journal of Experimental Botany

2015 Aug 12

Regulation of the scp Genes in the Cyanobacterium Synechocystis sp. PCC 6803—What is New?

Otilia Cheregi, Christiane Funk

MDPI Molecules

2015 Jun 25

Foxf2 Is Required for Brain Pericyte Differentiation and Development and Maintenance of the Blood-Brain Barrier

Azadeh Reyahi, Ali M Nik, Mozhgan Ghiami, Amel Gritli-Linde, Fredrik Pontén, Bengt R Johansson, Peter Carlsson

Dev Cell.

2015 March 18

Plant-mediated gene silencing restricts growth of the potato late blight pathogen Phytophthora infestans.

Jahan SN, Åsman AK, Corcoran P, Fogelqvist J, Vetukuri RR, Dixelius C.

Journal of Experimental Botany

2015 Feb 15

A transcriptome derived female-specific marker from the invasive Western mosquitofish (Gambusia affinis)

Lamatsch, D.K., Adolfsson, S., Senior, A.M., Christiansen, G., Pichler, M., Ozaki, Y., Smeds, L., Schartl, M. and Nakagawa, S.

PLoS One

2014 Dec 10

Fragmentation of tRNA in Phytophthora infestans asexual life cycle stages and during host plant infection.

Åsman AK, Vetukuri RR, Jahan SN, Fogelqvist J, Corcoran P, Avrova AO, Whisson SC, Dixelius C.

BMC Microbiology

2014 Nov 13

Redundancy among phospholipase D isoforms in resistance triggered by recognition of the Pseudomonas syringae effector AvrRpm1 in Arabidopsis thaliana

Oskar N. Johansson, Per Fahlberg, Elham Karimi, Anders K. Nilsson, Mats Ellerström and Mats X. Andersson

Frontiers Plant Science

2014 Nov 04

Involvement of the Electrophilic Isothiocyanate Sulforaphane in Arabidopsis Local Defense Responses

Mats X. Andersson, Anders K. Nilsson, Oskar N. Johansson, Gülin Boztaş, Lisa E. Adolfsson, Francesco Pinosa, Christel Garcia Petit, Henrik Aronsson, David Mackey, Mahmut Tör, Mats Hamberg, Mats Ellerström

Plant Physiology