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2024 Feb 07
Recommendations for Method Development and Validation of qPCR and dPCR Assays in Support of Cell and Gene Therapy Drug Development
Amanda Hays, Mark Wissel, Kelly Colletti, Russell Soon, Mitra Azadeh, Justin Smith, Rajitha Doddareddy, Melanie Chalfant, Wendy Adamowicz, Swarna Suba Ramaswamy, Sanjay L Dholakiya, Sebastian Guelman , Bryan Gullick, Jennifer Durham, Keith Rennier, Pruthvi Nagilla, Anamica Muruganandham, Manisha Diaz, Cassandra Tierney, Kaarthik John, Jenny Valentine, Timothy Lockman, Hsing-Yin Liu, Benjamin Moritz, Jean Paul Ouedraogo, Marie-Soleil Piche, Muriel Smet, Jacqueline Murphy, Kaylyn Koenig, Agnes Zybura, Carrie Vyhlidal, Jonathan Mercier, Niketa Jani, Mikael Kubista, Donald Birch, Karlin Morse, Oskar Johansson
AAPS Journal
2023 Nov 16
Thermoprotection by a cell membrane-localized metacaspase in a green alga
Zou Y, Sabljić I, Horbach N, Dauphinee AN, Åsman A, Sancho Temino L, Minina EA, Drag M, Stael S, Poreba M, Ståhlberg J, Bozhkov PV.
Plant Cell
2023 Feb 26
Vandana Singh, Pegah Johansson, Elina Ekedahl, Yii-Lih Lin, Ola Hammarsten, Fredrik Westerlund
Biochemical and Biophysical Research Communications
2023 Feb 01
Sriram KK, Moa S Wranne, Tsegaye Sewunet, Elina Ekedahl, Maarten Coorens, Teerawit Tangkoskul, Visanu Thamlikitkul, Christian G Giske, Fredrik Westerlund
JAC Antimicrobial Resistance
2023 Jan 25
Organoid technology for personalized pancreatic cancer therapy
Axel Bengtsson, Roland Andersson, Jonas Rahm, Karthik Ganganna, Bodil Andersson & Daniel Ansari
Cellular Oncology
2023 Jan 05
Identification and characterization of plasmids carrying the mobile colistin resistance gene MCR-1 using optical DNA mapping
Sriram Kk, Moa S Wranne, Tsegaye Sewunet, Elina Ekedahl, Maarten Coorens, Teerawit Tangkoskul, Visanu Thamlikitkul, Christian G Giske, Fredrik Westerlund
JAC-Antimicrobial resistance
2022 Aug 19
The Effect of Heavy Metals on Conjugation Efficiency of an F-Plasmid in Escherichia coli
Martin Palm, Alfred Fransson, Julia Hultén, Karolina Búcaro Stenman, Amina Allouche, Oscar E. Chiang, Mirthe L. Constandse, Karlijn J. van Dijk,Suheda Icli,Bela Klimesova,Emma Korhonen,Gema Martínez-Crespo, Dominik Meggers,Margarita Naydenova,Maria An. Polychronopoulou,Dominik B. Schuntermann,Havva Unal,Agnieszka Wasylkowska andAnne Farewell
MDPI Antibiotics
2022 Jun 03
A simple cut and stretch assay to detect antimicrobial resistance genes on bacterial plasmids by single‐molecule fluorescence microscopy
Gaurav Goyal, Elina Ekedahl, My Nyblom, Jens Krog, Erik Fröbrant, Magnus Brander, Tsegaye Sewunet, Teerawit Tangkoskul, Christian G. Giske, Linus Sandegren, Visanu Thamlikitkul, Tobias Ambjörnsson & Fredrik Westerlund
Nature Scientific reports
2022 May 25
Identity of blaCTX-M Carrying Plasmids in Sequential ESBL-E. coli Isolates from Patients with Recurrent Urinary Tract Infections
Nahid Karami, Sriram Kk, Shora Yazdanshenas, Yii-Lih Lin, Daniel Jaén-Luchoro, Elina Ekedahl, Sanjana Parameshwaran, Anna Lindblom, Christina Åhrén, Fredrik Westerlund
Microorganisms
2022 Feb 26
Quantification of single-strand DNA lesions caused by the topoisomerase II poison etoposide using single DNA molecule imaging
Vandana Singh, Pegah Johansson, Elina Ekedahl, Yii-Lih Lin, Ola Hammarsten, Fredrik Westerlund
Biochemical and Biophysical Research Communications
2021 Dec 31
PSB33 protein sustains photosystem II in plant chloroplasts under UV-A light
Anders K Nilsson, Aleš Pěnčík, Oskar N Johansson, Daniel Bånkestad, Rikard Fristedt, Marjaana Suorsa, Andrea Trotta, Ondřej Novák, Fikret Mamedov, Eva-Mari Aro, Björn Lundin Burmeister
Journal of Experimental Botany
2021 Dec 16
High diversity of blaNDM-1-encoding plasmids in Klebsiella pneumoniae isolated from neonates in a Vietnamese hospital
Sriram Kk, Elina Ekedahl, Ngoc Thi Bich Hoang, Tsegaye Sewunet, Björn Berglund, Ludwig Lundberg, Shoeib Nematzadeh, Maud Nilsson, Lennart E Nilsson, Ngai Kien Le, Dien Minh Tran, Håkan Hanberger, Linus Olson, Mattias Larsson, Christian G Giske, Fredrik Westerlund
International Journal of Antimicrobial Agents
2021 Jul 02
Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae)
J. S. Eriksson, C. D. Bacon, D. J. Bennett, B. E. Pfeil, B. Oxelman & A. Antonelli
BMC Ecology and Evolution
2021 Jun 03
Oxidative stress response in regulatory and conventional T cells: a comparison between patients with chronic coronary syndrome and healthy subjects
Anna K. Lundberg, Rosanna W. S. Chung, Louise Zeijlon, Gustav Fernström & Lena Jonasson
Journal of Translational Medicine
2021 Apr 07
Marine microalgae for outdoor biomass production—A laboratory study simulating seasonal light and temperature for the west coast of Sweden
Otilia Cheregi, Johan Engelbrektsson, Mats X. Andersson, Niklas Strömberg, Susanne Ekendahl, Anna Godhe, Cornelia Spetea
Physiolgia Plantarum
2021 Feb 02
Increasing CRISPR-Cas9-mediated Knock-in Efficiency in Human Cell Lines with Viral Modifiers
Anna Hanse
Chalmers Masters Thesis
2020 Feb 21
Dominance of Mating Type A1 and Indication of Epigenetic Effects During Early Stages of Mating in Phytophthora infestans.
Tzelepis G, Hodén KP, Fogelqvist J, Åsman AKM, Vetukuri RR, Dixelius C.
Frontiers in Microbiology
2019 Oct 22
Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation
Oskar N. Johansson, Mats Töpel, Jenny Egardt, Matthew I. M. Pinder, Mats X. Andersson, Anna Godhe & Adrian K. Clarke
Nature Scientific Reports
2019 Oct 11
The MTH1 inhibitor TH588 is a microtubule-modulating agent that eliminates cancer cells by activating the mitotic surveillance pathway
Nadia Gul, Joakim Karlsson, Carolina Tängemo, Teo Lind, Samuel Tuyizere, Rosie Perkins, Chandu Ala, Zhiyuan Zou, Erik Larsson, Martin O. Bergö & Per Lindahl
Nature Scientific reports
2019 Oct 10
Comparative Analysis of Midgut Regeneration Capacity and Resistance to Oral Infection in Three Disease-Vector Mosquitoes
Maria Janeh, Dani Osman & Zakaria Kambris
Nature Scientific reports
2019 Sep 02
Characterization of midgut regeneration capacity and immune responses in local Aedes albopictus mosquitoes
Maria Janeh
American University of Beirut
2019 Aug 06
Friends With Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema marinoi
Oskar N. Johansson, Matthew I. M. Pinder, Fredrik Ohlsson, Jenny Egardt, Mats Töpel,4 and Adrian K. Clarke
Frontiers Microbiology
2019 Jun 14
K+ and Cl− channels/transporters independently fine-tune photosynthesis in plants
Emilija Dukic, Andrei Herdean, Otilia Cheregi, Anurag Sharma, Hugues Nziengui, Dominika Dmitruk, Katalin Solymosi, Mathias Pribil & Cornelia Spetea
Nature Scientific Reports
2019 Jun 12
Evaluation of Precursor and Cofactor Engineering Strategies Influencing Fatty Acid Metabolism in Saccharomyces cerevisiae
Bergman, A
Chalmers PhD Thesis
2019 Apr 05
Nucleomorph Small RNAs in Cryptophyte and Chlorarachniophyte Algae.
Åsman AKM, Curtis BA, Archibald JM.
Genome Biology and Evolution
2019 Mar 29
Functional Expression of Gloeobacter Rhodopsin in PSI-Less Synechocystis sp. PCC6803
Que Chen, Jos Arents, J. Merijn Schuurmans, Srividya Ganapathy, Willem J. de Grip, Otilia Cheregi, Christiane Funk, Filipe Branco dos Santos, Klaas J. Hellingwerf
Frontiers Bioengineering Biotechnology
2019 Mar 29
Effects of overexpression of STB5 in Saccharomyces cerevisiae on fatty acid biosynthesis, physiology and transcriptome
Bergman, A., Vitay, D., Hellgren, J., Chen, Y., Nielsen, J., Siewers, V
FEMS Yeast Research
2019 Feb 27
Microalgae biotechnology in Nordic countries – the potential of local strains
Otilia Cheregi, Susanne Ekendahl, Johan Engelbrektsson, Niklas Strömberg, Anna Godhe, Cornelia Spetea
Physiolgia Plantarum
2019 Feb 05
Polyploid Phylogenetics in Plants: Insights on non-model organisms in Fabaceae and Malvaceae
Jonna Sofa Eriksson
Gothenburg University
2019 Feb 01
Heterologous phosphoketolase expression redirects flux towards acetate, perturbs sugar phosphate pools and increases respiratory demand in Saccharomyces cerevisiae
Bergman, A., Hellgren, J., Moritz, T., Siewers, V., Nielsen, J., Chen, Y.
Micorbial Cell Factory
2018 Nov 14
Combining retinal-based and chlorophyll-based (oxygenic) photosynthesis: Proteorhodopsin expression increases growth rate and fitness of a ∆PSI strain of Synechocystis sp. PCC6803
Que Chen, Jos Arents, J. Merijn Schuurmans, Srividya Ganapathy, Willem J. de Grip, Otilia Cheregi, Christiane Funk, Filipe Branco dos Santos, Klaas J. Hellingwerf
Metabolic Engineering
2018 Aug 13
Involvement of lipid transfer proteins in resistance against a non-host powdery mildew in Arabidopsis thaliana
Per Fahlberg, Nathalie Buhot, Oskar N. Johansson, Mats X. Andersson
Molecular Plant Pathology
2018 May 16
Coupling RNA annealing and strand displacement: a FRET-based microplate reader assay for RNA chaperone activity
Lukas Rajkowitsch, Renée Schroeder
Biotechniques
2018 Jan 27
Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)
Jonna S. Eriksson, Filipe de Sousa, Yann J. K. Bertrand, Alexandre Antonelli, Bengt Oxelman & Bernard E. Pfeil
BMC Evolutionary Biology
2017 May 24
Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities
Thomas Kieselbach, Otilia Cheregi, Beverley R. Green & Christiane Funk
Photosynthesis Research
2017 Mar 16
Damage-Induced Cell Regeneration in the Midgut of Aedes albopictus Mosquitoes
Maria Janeh, Dani Osman & Zakaria Kambris
Nature Scientific reports
2016 Dec 02
A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae)
J.S. Eriksson, J.L. Blanco-Pastor, F. Sousa, Y.J.K. Bertrand, B.E. Pfeil
Molecular Phylogenetics and Evolution
2016 Nov 15
Functional expression and evaluation of heterologous phosphoketolases in Saccharomyces cerevisiae
Bergman, A., Siewers, V., Nielsen, J., Chen, Y.
AMB Express
2016 Jul 15
The activity of HYDROPEROXIDE LYASE 1 regulates accumulation of galactolipids containing 12-oxo-phytodienoic acid in Arabidopsis
Anders K. Nilsson, Per Fahlberg, Oskar N. Johansson, Mats Hamberg, Mats X. Andersson, Mats Ellerström
Journal of Experimental Botany
2016 Jul 01
Human and murine hematopoietic stem cell aging is associated with functional impairments and intrinsic megakaryocytic/erythroid bias
Rundberg Nilsson, A., Soneji, S., Adolfsson, S., Bryder D. and Pronk, C.J.
PLoS One
2016 May 24
A voltage-dependent chloride channel fine-tunes photosynthesis in plants
Andrei Herdean, Enrico Teardo, Anders K. Nilsson, Bernard E. Pfeil, Oskar N. Johansson, Renáta Ünnep, Gergely Nagy, Ottó Zsiros, Somnath Dana, Katalin Solymosi, Győző Garab, Ildikó Szabó, Cornelia Spetea & Björn Lundin
Nature Communications
2016 May 24
Insights into the Cyanobacterial Deg/HtrA Proteases
Otilia Cheregi, Raik Wagner, Christiane Funk
Frontiers in Plant Science
2016 May 13
Foxf2 is required for secondary palate development and Tgfβ signaling in palatal shelf mesenchyme
Ali M. Nik, Jeanette A. Johansson 1, Mozhgan Ghiami, Azadeh Reyahi, Peter Carlsson
Developmental Biology
2016 Mar 24
Phytophthora infestans Argonaute 1 binds microRNA and small RNAs from effector genes and transposable elements.
Åsman AK, Fogelqvist J, Vetukuri RR, Dixelius C.
New Phytologist
2015 Dec 01
A quick and robust method for quantification of the hypersensitive response in plants.
Oskar N. Johansson
PeerJ
2015 Nov 13
Acylated monogalactosyl diacylglycerol: prevalence in the plant kingdom and identification of an enzyme catalyzing galactolipid head group acylation in Arabidopsis thaliana
The Plant Journal
2015 Nov 01
Inactivation of the Deg protease family in the cyanobacterium Synechocystis sp. PCC 6803 has impact on the outer cell layers
Otilia Cheregi, Helder Miranda, Gerhard Gröbner, Christiane Funk
Journal of Photochemistry and Photobiology
2015 Sep 01
Presence of state transitions in the cryptophyte alga Guillardia theta
Otilia Cheregi, Eva Kotabová, Ondřej Prášil, Wolfgang P Schröder, Radek Kaňa, Christiane Funk
Journal of Experimental Botany
2015 Aug 12
Regulation of the scp Genes in the Cyanobacterium Synechocystis sp. PCC 6803—What is New?
Otilia Cheregi, Christiane Funk
MDPI Molecules
2015 Jun 25
Foxf2 Is Required for Brain Pericyte Differentiation and Development and Maintenance of the Blood-Brain Barrier
Azadeh Reyahi, Ali M Nik, Mozhgan Ghiami, Amel Gritli-Linde, Fredrik Pontén, Bengt R Johansson, Peter Carlsson
Dev Cell.
2015 March 18
Plant-mediated gene silencing restricts growth of the potato late blight pathogen Phytophthora infestans.
Jahan SN, Åsman AK, Corcoran P, Fogelqvist J, Vetukuri RR, Dixelius C.
Journal of Experimental Botany
2015 Feb 15
A transcriptome derived female-specific marker from the invasive Western mosquitofish (Gambusia affinis)
Lamatsch, D.K., Adolfsson, S., Senior, A.M., Christiansen, G., Pichler, M., Ozaki, Y., Smeds, L., Schartl, M. and Nakagawa, S.
PLoS One
2014 Dec 10
Fragmentation of tRNA in Phytophthora infestans asexual life cycle stages and during host plant infection.
Åsman AK, Vetukuri RR, Jahan SN, Fogelqvist J, Corcoran P, Avrova AO, Whisson SC, Dixelius C.
BMC Microbiology
2014 Nov 13
Redundancy among phospholipase D isoforms in resistance triggered by recognition of the Pseudomonas syringae effector AvrRpm1 in Arabidopsis thaliana
Oskar N. Johansson, Per Fahlberg, Elham Karimi, Anders K. Nilsson, Mats Ellerström and Mats X. Andersson
Frontiers Plant Science
2014 Nov 04
Involvement of the Electrophilic Isothiocyanate Sulforaphane in Arabidopsis Local Defense Responses
Mats X. Andersson, Anders K. Nilsson, Oskar N. Johansson, Gülin Boztaş, Lisa E. Adolfsson, Francesco Pinosa, Christel Garcia Petit, Henrik Aronsson, David Mackey, Mahmut Tör, Mats Hamberg, Mats Ellerström
Plant Physiology
2014 Oct 17
Phylogenetic Properties of 50 Nuclear Loci in Medicago (Leguminosae) Generated Using Multiplexed Sequence Capture and Next-Generation Sequencing
Filipe de Sousa, Yann J. K. Bertrand, Stephan Nylinder, Bengt Oxelman, Jonna S. Eriksson, Bernard E. Pfeil
PloS one
2014 Jun 02
Role of the penetration-resistance genes PEN1, PEN2 and PEN3 in the hypersensitive response and race-specific resistance in Arabidopsis thaliana
Oskar N. Johansson, Elena Fantozzi, Per Fahlberg, Anders K. Nilsson, Nathalie Buhot, Mahmut Tör, Mats X. Andersson
The Plant Journal
2014 Feb 19
Formation of oxidized phosphatidylinositol and 12-oxo-phytodienoic acid containing acylated phosphatidylglycerol during the hypersensitive response in Arabidopsis
Anders K. Nilsson, Oskar N. Johansson, Per Fahlberg, Feray Steinhart, Mikael B. Gustavsson, Mats Ellerström, Mats X. Andersson
Phytochemistry
2014 Feb 01
LC-MS/MS characterization of combined glycogenin-1 and glycogenin-2 enzymatic activities reveals their self-glucosylation preferences.
Nilsson J, Halim A, Larsson E, Moslemi AR, Oldfors A, Larson G, Nilsson J.
Biochimica et Biophysica Acta
2013 Jul 26
Phenotypic diversification by gene silencing in Phytophthora plant pathogens
Vetukuri RR, Asman AK, Jahan SN, Avrova AO, Whisson SC, Dixelius C.
Commun Integr Biol.
2013 Dec 01
Polyglucosan body myopathy caused by defective ubiquitin ligase RBCK1
Johanna Nilsson, Benedikt Schoser, Pascal Laforet, Ognian Kalev, Christopher Lindberg, Norma B Romero, Marcela Dávila López, Hasan O Akman, Karim Wahbi, Stephan Iglseder, Christian Eggers, Andrew G Engel, Salvatore Dimauro, Anders Oldfors
Annals of Neurology
2013 Jan 16
Lack of dosage compensation accompanies the arrested stage of sex chromosome evolution in ostriches.
Adolfsson, S. and Ellegren, H.
Molecular Biology and Evolution
2013 Jan 14
Co-expression analysis, proteomic and metabolomic study on the impact of a Deg/HtrA protease triple mutant in Synechocystis sp. PCC 6803 exposed to temperature and high light stress
Hélder Miranda, Otilia Cheregi, Sergiu Netotea, Torgeir R Hvidsten, Thomas Moritz, Christiane Funk
Journal of Proteomics
2012 Dec 14
Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans.
Vetukuri RR, Åsman AK, Tellgren-Roth C, Jahan SN, Reimegård J, Fogelqvist J, Savenkov E, Söderbom F, Avrova AO, Whisson SC, Dixelius C.
PLoS One
2011 Apr 30
Rational improvement of cell-free protein synthesis
Anders Pedersen, Kristofer Hellberg, Johan Enberg, B. Göran Karlsson
New Biotechnology
2010 Sep 01
Characterization of site-specific O-glycan structures within the mucin-like domain of alpha-dystroglycan from human skeletal muscle
Nilsson J, Nilsson J, Larson G, Grahn A.
Glycobiology
2010 Apr 01
Evaluation of elevated ploidy and asexual reproduction as alternative explanations for geographic parthenogenesis in Eucypris virens ostracods.
Adolfsson, S., Michalakis, Y., Paczesniak, D., Bode, S.N.S., Butlin, R.K., Lamatsch, D.K., Martins, M.J.F., Schmit, O., Vandekerkhove, J. and Jokela, J.
Evolution
2010 Apr 01
Ali-Reza Moslemi, Ph.D., Christopher Lindberg, M.D., Ph.D., Johanna Nilsson, M.S., Homa Tajsharghi, Ph.D., Bert Andersson, M.D., Ph.D., and Anders Oldfors, M.D., Ph.D.
2008 Aug 22
A Mutant Small Heat Shock Protein with Increased Thylakoid Association Provides an Elevated Resistance Against UV-B Damage in Synechocystis 6803
Zsolt Balogi, Ottilia Cheregi, Kim C Giese, Elizabeth Vierling, Imre Vass, László Vígh, Ibolya Horváth
Journal of Biological Chemistry
2007 Dec 13
Dissecting RNA chaperone activity
Lukas Rajkowitsch, Renée Schroeder
RNA Biology
2007 Nov 05
Molecular Mechanisms of Light Stress of Photosynthesis
Imre Vass, Krisztian Cser, Otilia Cheregi
Annals of NYAS
2007 Nov 04
RNA chaperones, RNA annealers and RNA helicases
Lukas Rajkowitsch, Doris Chen, Sabine Stampfl, Katharina Semrad, Christina Waldsich, Oliver Mayer, Michael F Jantsch, Robert Konrat, Udo Bläsi, Renée Schroeder
RNA Biology
2007 Sep 20
The spread of apomixis and its effect on resident genetic variation
Adolfsson, S. and Bengtsson, B.O.
Journal of Evolutionary Biology
2007 Jun 01
The role of the FtsH and Deg proteases in the repair of UV-B radiation-damaged Photosystem II in the cyanobacterium Synechocystis PCC 6803
Otilia Cheregi, Cosmin Sicora, Peter B Kós, Myles Barker, Peter J Nixon, Imre Vass
BBA Bioenergetics
2007 Mar 09
Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories
Ravi Shankar, Amit Chaurasia, Biswaroop Ghosh, Dmitry Chekmenev, Evgeny Cheremushkin, Alexander Kel, Mitali Mukerji
Mol Genet Genomics
2006 Jan 01
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
V Matys, O V Kel-Margoulis, E Fricke, I Liebich, S Land, A Barre-Dirrie, I Reuter, D Chekmenev, M Krull, K Hornischer, N Voss, P Stegmaier, B Lewicki-Potapov, H Saxel, A E Kel, E Wingender
Nucleic Acids Research
2005 Jul 01
P-Match: transcription factor binding site search by combining patterns and weight matrices
D S Chekmenev , C Haid, A E Kel
Nucleic Acids Research
2021 Oct 04
Phytophthora infestans Ago1-associated miRNA promotes potato late blight disease.
Hu X, Persson Hodén K, Liao Z, Åsman A, Dixelius C.
New Phytologist
2004 Jan 02
Reinitiation and recycling are distinct processes occurring downstream of translation termination in yeast
Lukas Rajkowitsch, Cristina Vilela, Karine Berthelot, Carmen Velasco Ramirez, John E G McCarthy
J Molecular Biology
2003 Jun 03
Composition-sensitive analysis of the human genome for regulatory signals
Olga V Kel-Margoulis, Dmitri Tchekmenev, Alexander E Kel, Ellen Goessling, Klaus Hornischer, Birgit Lewicki-Potapov, Edgar Wingender
In Silico Biology
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